Compiling QHG4 for Virus and VirusHostPop

Alternative Population and Action Directories

We use the tool build_alt_modpop.py to create customized population and action directories:

useful_stuff/build_alt_modpop.py vir_test VirusHostPop

This creates the directories vir_test_mod and vir_test_pop.

Compiling QHGMain for plugins

DYNAMIC_POPS=1 OPT=1 OUT=QHGMainDyn make clean QHGMain

This creates the excutable QHGMainDyn.

Compiling the plugin

SHORT=vir_test make plugins

We are now almost ready to run the simulation